Inborn errors of type I IFN immunity in patients with life-threatening COVID-19

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Science 370 (6515) eabd4570 [2020-10-23; online 2020-09-24]

Clinical outcome upon infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ranges from silent infection to lethal coronavirus disease 2019 (COVID-19). We have found an enrichment in rare variants predicted to be loss-of-function (LOF) at the 13 human loci known to govern Toll-like receptor 3 (TLR3)- and interferon regulatory factor 7 (IRF7)-dependent type I interferon (IFN) immunity to influenza virus in 659 patients with life-threatening COVID-19 pneumonia relative to 534 subjects with asymptomatic or benign infection. By testing these and other rare variants at these 13 loci, we experimentally defined LOF variants underlying autosomal-recessive or autosomal-dominant deficiencies in 23 patients (3.5%) 17 to 77 years of age. We show that human fibroblasts with mutations affecting this circuit are vulnerable to SARS-CoV-2. Inborn errors of TLR3- and IRF7-dependent type I IFN immunity can underlie life-threatening COVID-19 pneumonia in patients with no prior severe infection.

Category: Genomics & transcriptomics

Type: Journal article

PubMed 32972995

DOI 10.1126/science.abd4570

Crossref 10.1126/science.abd4570

dbGaP: phs002245.v1.p1 Whole-genomese quencing datasets; critical patients and asymptomatic controls
Other data in Supplementary Materials
NA: Plasma, cells, genomic DNA, and other materials/samples are available upon request from authors or the Amsterdam UMC Covid-19 Biobank
Genotype count for all coding variants in type I IFN genes

Publications 7.1.2