Category: Genomics & transcriptomics

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Year 2025

PubMed DOI Crossref
Central and peripheral kynurenine pathway metabolites in COVID-19: Implications for neurological and immunological responses.
Li X, Edén A, Malwade S, ..., Schwieler L, Erhardt S
Brain Behav Immun 124 (-) 163-176 [2025-02-00; online 2024-11-29]
Category: Genomics & transcriptomics Category: Health Funder: KAW/SciLifeLab National COVID program Funder: VR Type: Journal article
PubMed DOI Crossref
KLRB1 expression in nasopharyngeal mucosa as a prognostic biomarker in COVID-19 patients.
García-Aranda M, Onieva MÁ, Martín-García D, ..., Barragán-Mallofret I, Redondo M
Sci Rep 15 (1) 3079 [2025-01-24; online 2025-01-24]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
SARS-CoV-2 variants mediated tissue-specific metabolic reprogramming determines the disease pathophysiology in a hamster model.
Kaur Sardarni U, Ambikan AT, Acharya A, ..., Neogi U, Byrareddy SN
Brain Behav Immun 123 (-) 914-927 [2025-01-00; online 2024-10-29]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Blood DNA virome associates with autoimmune diseases and COVID-19.
Sasa N, Kojima S, Koide R, ..., Parrish NF, Okada Y
Nat Genet 57 (1) 65-79 [2025-01-00; online 2025-01-03]
Category: Genomics & transcriptomics Category: Serology Type: Journal article

Year 2024

PubMed DOI Crossref
Characterization of SARS-CoV-2 nucleocapsid protein oligomers.
Farci D, Graça AT, Hall M, ..., Schröder WP, Piano D
J Struct Biol 217 (1) 108162 [2024-12-13; online 2024-12-13]
Category: Genomics & transcriptomics Category: Imaging Category: Proteins Type: Journal article
PubMed DOI Crossref
SARS-CoV-2 N protein recruits G3BP to double membrane vesicles to promote translation of viral mRNAs.
Long S, Guzyk M, Perez Vidakovics L, ..., Achour A, McInerney GM
Nat Commun 15 (1) 10607 [2024-12-05; online 2024-12-05]
Category: Genomics & transcriptomics Category: Proteins Type: Journal article
PubMed DOI Crossref
Hyperbaric oxygen therapy as an immunomodulatory intervention in COVID-19-induced ARDS: Exploring clinical outcomes and transcriptomic signatures in a randomised controlled trial.
Kjellberg A, Zhao A, Lussier A, ..., Rodriguez-Wallberg KA, Lindholm P
Pulm Pharmacol Ther 87 (-) 102330 [2024-12-00; online 2024-10-10]
Category: Genomics & transcriptomics Category: Health Funder: VR Type: Journal article
PubMed DOI Crossref
NK Cell and Monocyte Dysfunction in Multisystem Inflammatory Syndrome in Children.
Dick JK, Sangala JA, Krishna VD, ..., Pravetoni M, Hart GT
J Immunol 213 (10) 1452-1466 [2024-11-15; online 2024-10-11]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Cross-sectional and longitudinal genotype to phenotype surveillance of SARS-CoV-2 variants over the first four years of the COVID-19 pandemic.
Akerman A, Fichter C, Milogiannakis V, ..., Aggarwal A, Turville SG
EBioMedicine 110 (-) 105415 [2024-11-15; online 2024-11-15]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Older patients affected by COVID-19: investigating the existence of biological phenotypes.
Zucchelli A, Parigi M, Giliani S, ..., Bellelli G, Marengoni A
BMC Geriatr 24 (1) 923 [2024-11-07; online 2024-11-07]
Category: Genomics & transcriptomics Category: Serology Type: Journal article
PubMed DOI Crossref
The HLA-B -21 M/T dimorphism associates with disease severity in COVID-19.
Strunz B, Momayyezi P, Bilev E, ..., Strålin K, Hammer Q
Genes Immun - (-) - [2024-11-01; online 2024-11-01]
Category: Genomics & transcriptomics Funder: KAW/SciLifeLab National COVID program Funder: VR Type: Journal article
PubMed DOI Crossref
Real-world assessment of immunogenicity in immunocompromised individuals following SARS-CoV-2 mRNA vaccination: a two-year follow-up of the prospective clinical trial COVAXID.
Chen P, Bergman P, Blennow O, ..., Aleman S, Ljunggren H
EBioMedicine 109 (-) 105385 [2024-11-00; online 2024-10-11]
Category: Genomics & transcriptomics Category: Health Funder: KAW/SciLifeLab National COVID program Funder: VR Type: Journal article
PubMed DOI Crossref
Identification of novel and potent inhibitors of SARS-CoV-2 main protease from DNA-encoded chemical libraries.
Akaberi D, Pourghasemi Lati M, Krambrich J, ..., Verho O, Lennerstrand J
Antimicrob Agents Chemother 68 (10) e0090924 [2024-10-08; online 2024-08-28]
Category: Genomics & transcriptomics Funder: KAW/SciLifeLab National COVID program Funder: VR Type: Journal article
PubMed DOI Crossref
Decoding the intricacies: a comprehensive analysis of microRNAs in the pathogenesis, diagnosis, prognosis and therapeutic strategies for COVID-19.
Smail SW, Hirmiz SM, Ahmed AA, ..., Amin K, Janson C
Front Med (Lausanne) 11 (-) 1430974 [2024-10-07; online 2024-10-07]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
The Omicron Variant Is Associated with a Reduced Risk of the Post COVID-19 Condition and Its Main Phenotypes Compared to the Wild-Type Virus: Results from the EuCARE-POSTCOVID-19 Study.
Bai F, Santoro A, Hedberg P, ..., Marchetti G, EuCARE Project
Viruses 16 (9) - [2024-09-23; online 2024-09-23]
Category: Genomics & transcriptomics Category: Omicron VoC Category: Post-COVID Funder: H2020 Type: Journal article
PubMed DOI Crossref
Is Autophagy a Friend or Foe in SARS-CoV-2 Infection?
Khan A, Ling J, Li J
Viruses 16 (9) - [2024-09-20; online 2024-09-20]
Category: Genomics & transcriptomics Funder: VR
PubMed DOI Crossref
SARS-CoV-2 brainstem encephalitis in human inherited DBR1 deficiency.
Chan Y, Lundberg V, Le Pen J, ..., Ekwall O, Zhang S
J Exp Med 221 (9) - [2024-09-02; online 2024-07-18]
Category: Genomics & transcriptomics Funder: VR Type: Journal article
PubMed DOI Crossref
Therapeutic potential of mesenchymal stem cell-derived extracellular vesicles in SARS-CoV-2 and H1N1 influenza-induced acute lung injury.
Lee JH, Jeon H, Lötvall J, Cho BS
J Extracell Vesicles 13 (9) e12495 [2024-09-00; online 2024-09-10]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Isolation and characterization of IgG3 glycan-targeting antibodies with exceptional cross-reactivity for diverse viral families.
Vukovich MJ, Shiakolas AR, Lindenberger J, ..., Sautto GA, Georgiev IS
PLoS Pathog 20 (9) e1012499 [2024-09-00; online 2024-09-18]
Category: Genomics & transcriptomics Category: Proteins Funder: SciLifeLab PLP program Type: Journal article
PubMed DOI Crossref
Clinical and Immunologic Effects of Paraprobiotics in Long-COVID Patients: A Pilot Study.
Docampo MJ, Batruch M, Oldrati P, ..., Martin R, Sospedra M
Neurol Neuroimmunol Neuroinflamm 11 (5) e200296 [2024-09-00; online 2024-08-06]
Category: Genomics & transcriptomics Category: Post-COVID Type: Journal article
PubMed DOI Crossref
Emerging Microorganisms and Infectious Diseases: One Health Approach for Health Shared Vision.
Ristori MV, Guarrasi V, Soda P, ..., Riva E, Angeletti S
Genes (Basel) 15 (7) - [2024-07-11; online 2024-07-11]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Discovery of a novel inhibitor of macropinocytosis with antiviral activity.
Porebski B, Christ W, Corman A, ..., Hühn D, Fernandez-Capetillo O
Mol Ther - (-) - [2024-07-02; online 2024-07-02]
Category: Genomics & transcriptomics Funder: VR Type: Journal article
PubMed DOI Crossref
Spike deep mutational scanning helps predict success of SARS-CoV-2 clades.
Dadonaite B, Brown J, McMahon TE, ..., Veesler D, Bloom JD
Nature 631 (8021) 617-626 [2024-07-00; online 2024-07-03]
Category: Genomics & transcriptomics Funder: SciLifeLab PLP program Type: Journal article
PubMed DOI Crossref
ADAM-17 Activity and Its Relation to ACE2: Implications for Severe COVID-19.
Sun J, Edsfeldt A, Svensson J, ..., Goncalves I, Swärd P
Int J Mol Sci 25 (11) - [2024-05-29; online 2024-05-29]
Category: Genomics & transcriptomics Category: Proteins Funder: Hjärt-Lungfonden Funder: VR Type: Journal article
PubMed DOI Crossref
Sustained IFN signaling is associated with delayed development of SARS-CoV-2-specific immunity.
Brunet-Ratnasingham E, Morin S, Randolph HE, ..., Wolf G, Kaufmann DE
Nat Commun 15 (1) 4177 [2024-05-16; online 2024-05-16]
Category: Genomics & transcriptomics Category: Serology Funder: Hjärt-Lungfonden Funder: KAW/SciLifeLab National COVID program Funder: VR Type: Journal article
PubMed DOI Crossref
Structural basis of broad SARS-CoV-2 cross-neutralization by affinity-matured public antibodies.
Sheward DJ, Pushparaj P, Das H, ..., Karlsson Hedestam GB, Hällberg BM
Cell Rep Med - (-) 101577 [2024-05-15; online 2024-05-15]
Category: Genomics & transcriptomics Category: Omicron VoC Category: Proteins Funder: KAW/SciLifeLab National COVID program Funder: VR Type: Journal article
PubMed DOI Crossref
Anexelekto (AXL) no more: microRNA-155 (miR-155) controls the "Uncontrolled" in SARS-CoV-2.
Papadopoulos KI, Papadopoulou A, Aw TC
Hum Cell 37 (3) 582-592 [2024-05-00; online 2024-03-12]
Category: Genomics & transcriptomics Category: Proteins Type: Review
PubMed DOI Crossref
Comparative single-cell transcriptomic profile of hybrid immunity induced by adenovirus vector-based COVID-19 vaccines.
García-Vega M, Wan H, Reséndiz-Sandoval M, ..., Pan-Hammarström Q, Hernández J
Genes Immun 25 (2) 158-167 [2024-04-00; online 2024-04-03]
Category: Genomics & transcriptomics Category: Vaccines Funder: H2020 Funder: VR Type: Journal article
PubMed DOI Crossref
Regional european genetic ancestry predicts type I interferon level and risk of severe viral infection.
Nln I, Shum J, Ghodke-Puranik Y, ..., Goulielmos GN, Niewold TB
QJM - (-) - [2024-03-26; online 2024-03-26]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
New insights into complex formation by SARS-CoV-2 nsp10 and nsp14.
Sele C, Krupinska E, Andersson Rasmussen A, ..., Fisher SZ, Knecht W
Nucleosides Nucleotides Nucleic Acids - (-) 1-15 [2024-02-29; online 2024-02-29]
Category: Genomics & transcriptomics Category: Proteins Type: Journal article
PubMed DOI Crossref
P53-Independent G1-Cell Cycle Arrest Increases SARS-CoV-2 RNA Replication.
Husser C, Kwon H, Andersson K, ..., Mirazimi A, Monteil VM
Microorganisms 12 (3) - [2024-02-22; online 2024-02-22]
Category: Biochemistry Category: Genomics & transcriptomics Funder: H2020 Type: Journal article
PubMed DOI Crossref
Genomic, Proteomic, and Phenotypic Biomarkers of COVID-19 Severity: Protocol for a Retrospective Observational Study.
English A, McDaid D, Lynch SM, ..., Gibson DS, Walsh C
JMIR Res Protoc 13 (-) e50733 [2024-02-14; online 2024-02-14]
Category: Biochemistry Category: Genomics & transcriptomics Category: Serology Type: Journal article
PubMed DOI Crossref
A genome-wide association study for survival from a multi-centre European study identified variants associated with COVID-19 risk of death.
Minnai F, Biscarini F, Esposito M, ..., Renieri A, Colombo F
Sci Rep 14 (1) 3000 [2024-02-06; online 2024-02-06]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Genomic surveillance of omicron B.1.1.529 SARS-CoV-2 and its variants between December 2021 and March 2023 in Tamil Nadu, India-A state-wide prospective longitudinal study.
Selvavinayagam ST, Suvaithenamudhan S, Yong YK, ..., Shankar EM, Raju S
J Med Virol 96 (2) e29456 [2024-02-00; online 2024-02-08]
Category: Genomics & transcriptomics Category: Omicron VoC Funder: VR Funder: Vinnova Type: Journal article
PubMed DOI Crossref
Genetic determinants of SARS-CoV-2 and the clinical outcome of COVID-19 in Southern Bangladesh.
Hasan MM, Saha CK, Hamidullah Mehedi HM, ..., Sultana N, Mannan A
Immun Inflamm Dis 12 (2) e1171 [2024-02-00; online 2024-02-28]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Global Transcriptomic Analysis of Placentas from Women with Gestational SARS-CoV-2 Infection during the Third Trimester of Pregnancy.
Tang Y, Boggavarapu NR, Aronsson A, Gemzell-Danielsson K, Lalitkumar PG
Int J Mol Sci 25 (3) - [2024-01-28; online 2024-01-28]
Category: Genomics & transcriptomics Funder: H2020 Funder: VR Type: Journal article
PubMed DOI Crossref
Identifying novel inhibitors targeting Exportin-1 for the potential treatment of COVID-19.
Sharma T, Mondal T, Khan S, ..., Baig MH, Dong J
Arch Microbiol 206 (2) 69 [2024-01-19; online 2024-01-19]
Category: Drug Discovery Category: Genomics & transcriptomics Category: Proteins Funder: VR Type: Journal article
PubMed DOI Crossref
Evaluation of Genetic or Cellular Impairments in Type I IFN Immunity in a Cohort of Young Adults with Critical COVID-19.
Covill LE, Sendel A, Campbell TM, ..., Bergman P, Bryceson YT
J Clin Immunol 44 (2) 50 [2024-01-17; online 2024-01-17]
Category: Genomics & transcriptomics Category: Serology Funder: VR Type: Journal article
PubMed DOI Crossref
Exploring the conformational dynamics of the SARS-CoV-2 SL4 hairpin by combining optical tweezers and base analogues.
Sundar Rajan V, Wypijewska Del Nogal A, Levin S, Wilhelmsson LM, Westerlund F
Nanoscale 16 (2) 752-764 [2024-01-03; online 2024-01-03]
Category: Biochemistry Category: Genomics & transcriptomics Category: Proteins Funder: VR Type: Journal article

Year 2023

PubMed DOI Crossref
Genetic Predisposition to Elevated Levels of Circulating ADAM17 Is Associated with the Risk of Severe COVID-19.
Pan M, Goncalves I, Edsfeldt A, Sun J, Swärd P
Int J Mol Sci 24 (21) - [2023-11-01; online 2023-11-01]
Category: Biochemistry Category: Genomics & transcriptomics Funder: Hjärt-Lungfonden Type: Journal article
PubMed DOI Crossref
Sensitivity of the SARS-CoV-2 BA.2.86 variant to prevailing neutralising antibody responses.
Sheward DJ, Yang Y, Westerberg M, ..., Albert J, Murrell B
Lancet Infect Dis 23 (11) e462-e463 [2023-11-00; online 2023-09-27]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Funder: KAW/SciLifeLab National COVID program Type: Journal article
PubMed DOI Crossref
Early detection of the emerging SARS-CoV-2 BA.2.86 lineage through integrated genomic surveillance of wastewater and COVID-19 cases in Sweden, weeks 31 to 38 2023.
Espinosa-Gongora C, Berg C, Rehn M, ..., Andersson E, Movert E
Euro Surveill 28 (46) - [2023-11-00; online 2023-11-17]
Category: Genomics & transcriptomics Category: Other Funder: VR Research Area: Environmental virus profiling Type: Journal article
PubMed DOI Crossref
Autoantibodies against type I IFNs in humans with alternative NF-κB pathway deficiency.
Le Voyer T, Parent AV, Liu X, ..., Casanova JL, Puel A
Nature 623 (7988) 803-813 [2023-11-00; online 2023-11-08]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Funder: KAW/SciLifeLab National COVID program Type: Journal article
PubMed DOI Crossref
Mucosal and Serum Antibodies 3 Weeks after Symptomatic BA.2.86 Infection.
Bladh O, Greilert-Norin N, Havervall S, ..., Klingström J, Thålin C
N Engl J Med 389 (17) 1626-1628 [2023-10-26; online 2023-10-27]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Funder: KAW/SciLifeLab National COVID program Type: Journal article
PubMed DOI Crossref
Dual spatially resolved transcriptomics for human host-pathogen colocalization studies in FFPE tissue sections.
Sounart H, Lázár E, Masarapu Y, ..., Bergmann O, Giacomello S
Genome Biol 24 (1) 237 [2023-10-19; online 2023-10-19]
Category: Genomics & transcriptomics Funder: VR Type: Journal article
PubMed DOI Crossref
SARS-CoV-2 evolution in the Omicron era.
Roemer C, Sheward DJ, Hisner R, ..., Murrell B, Peacock TP
Nat Microbiol - (-) - [2023-10-16; online 2023-10-16]
Category: Genomics & transcriptomics Funder: H2020 Funder: KAW/SciLifeLab National COVID program Type: Journal article
PubMed DOI Crossref
Catch-up antibody responses and hybrid immunity in mRNA vaccinated patients at risk of severe COVID-19.
Al-Dury S, Waldenström J, Ringlander J, ..., Hellstrand K, Lagging M
Infect Dis (Lond) 55 (10) 744-750 [2023-10-00; online 2023-07-03]
Category: Genomics & transcriptomics Category: Vaccines Funder: VR Type: Journal article
DOI Crossref
Protective non-neutralizing mAbs Ab94 and Ab81 retain high-affinity and potent Fc-mediated function against SARS-CoV-2 variants from Omicron to XBB1.5
Izadi A, Godzwon M, Ohlin M, Nordenfelt P
- - (-) - [2023-09-29; online 2023-09-29]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Funder: KAW/SciLifeLab National COVID program Funder: VR Type: Preprint
PubMed DOI Crossref
Evaluation of a human mucosal tissue explant model for SARS-CoV-2 replication.
Gordhan BG, Herrera C, Pillay A, ..., Fox J, Kana BD
PLoS One 18 (9) e0291146 [2023-09-28; online 2023-09-28]
Category: Genomics & transcriptomics Category: Health Category: Other Category: Proteins Type: Journal article
PubMed DOI Crossref
Identification of essential genes associated with SARS-CoV-2 infection as potential drug target candidates with machine learning algorithms.
Taheri G, Habibi M
Sci Rep 13 (1) 15141 [2023-09-13; online 2023-09-13]
Category: Drug Discovery Category: Genomics & transcriptomics Category: Other Type: Journal article
PubMed DOI Crossref
The kinetics of SARS-CoV-2 viremia in COVID-19 patients receiving remdesivir.
Krifors A, Karlsson L, Ekman M, Lorant C, Skorup P
Eur J Clin Microbiol Infect Dis 42 (8) 951-958 [2023-08-00; online 2023-05-27]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Category: Public Health Type: Journal article
DOI Crossref
Loss of Y in regulatory T lymphocytes in the tumor micro-environment of primary colorectal cancers and liver metastases
Wójcik M, Juhas U, Mohammadi E, ..., Filipowicz N, Dumanski JP
- - (-) - [2023-06-22; online 2023-06-22]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Funder: Hjärt-Lungfonden Funder: VR Type: Preprint
PubMed DOI Crossref
Mucosal immunization with lactiplantibacillus plantarum-displaying recombinant SARS-CoV-2 epitopes on the surface induces humoral and mucosal immune responses in mice.
Hwang I, Valeriano VD, Song JH, ..., Engstrand L, Kang D
Microb Cell Fact 22 (1) 96 [2023-05-09; online 2023-05-09]
Category: Genomics & transcriptomics Category: Vaccines Funder: VR Type: Journal article
PubMed DOI Crossref
Global loss of cellular m6A RNA methylation following infection with different SARS-CoV-2 variants.
Vaid R, Mendez A, Thombare K, ..., Nystrom K, Mondal T
Genome Res 33 (3) 299-313 [2023-03-00; online 2023-03-01]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Increasing serum iron levels and their role in the risk of infectious diseases: a Mendelian randomization approach.
Butler-Laporte G, Farjoun Y, Chen Y, ..., Forgetta V, Richards JB
Int J Epidemiol - (-) - [2023-02-11; online 2023-02-11]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Type: Journal article

Year 2022

DOI Crossref
Loss of Y in leukocytes as a risk factor for critical COVID-19 in men
Bruhn-Olszewska B, Davies H, Sarkisyan D, ..., Frithiof R, Dumanski JP
Genome Med 14 (1) - [2022-12-14; online 2022-12-14]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Funder: Hjärt-Lungfonden Funder: KAW/SciLifeLab National COVID program Funder: VR Research Area: Call 2 Type: Journal article
PubMed DOI Crossref
Exome-wide association study to identify rare variants influencing COVID-19 outcomes: Results from the Host Genetics Initiative.
Butler-Laporte G, Povysil G, Kosmicki JA, ..., Ferreira MAR, Richards JB
PLoS Genet 18 (11) e1010367 [2022-11-00; online 2022-11-03]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Funder: KAW/SciLifeLab National COVID program Funder: VR Research Area: Biobanks for COVID-19 research Type: Journal article
PubMed DOI Crossref
Computational investigation of the increased virulence and pathogenesis of SARS-CoV-2 lineage B.1.1.7.
Murugan NA, Javali PS, Pandianb CJ, ..., Srivastava V, Jeyaraman J
Phys Chem Chem Phys 24 (34) 20371-20380 [2022-08-31; online 2022-08-31]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Whole blood DNA methylation analysis reveals respiratory environmental traits involved in COVID-19 severity following SARS-CoV-2 infection.
Barturen G, Carnero-Montoro E, Martínez-Bueno M, ..., Bernardo D, Alarcón-Riquelme ME
Nat Commun 13 (1) 4597 [2022-08-06; online 2022-08-06]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Seroprevalence of SARS-CoV-2 in Sweden, April 26 to May 9, 2021.
Beser J, Galanis I, Enkirch T, ..., Tegmark Wisell K, Bråve A
Sci Rep 12 (1) 10816 [2022-06-25; online 2022-06-25]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Age and sex effects on DNA methylation sites linked to genes implicated in severe COVID-19 and SARS-CoV-2 host cell entry.
Bohlin J, Page CM, Lee Y, ..., Magnus P, Håberg SE
PLoS One 17 (6) e0269105 [2022-06-09; online 2022-06-09]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
SARS-CoV-2 Omicron variants BA.1 and BA.2 both show similarly reduced disease severity of COVID-19 compared to Delta, Germany, 2021 to 2022.
Sievers C, Zacher B, Ullrich A, ..., An der Heiden M, Kröger S
Euro Surveill 27 (22) - [2022-06-00; online 2022-06-04]
Category: Genomics & transcriptomics Category: Health Category: Omicron VoC Type: Journal article
PubMed DOI Crossref
Time Trend in SARS-CoV-2 Seropositivity, Surveillance Detection- and Infection Fatality Ratio until Spring 2021 in the Tirschenreuth County-Results from a Population-Based Longitudinal Study in Germany.
Einhauser S, Peterhoff D, Beileke S, ..., Überla K, Wagner R
Viruses 14 (6) - [2022-05-27; online 2022-05-27]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Alphacoronavirus in a Daubenton's Myotis Bat (Myotis daubentonii) in Sweden.
Lwande OW, Thalin T, de Jong J, ..., Evander M, Ecke F
Viruses 14 (3) - [2022-03-08; online 2022-03-08]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Whole genome analysis and homology modeling of SARS-CoV-2 Indian isolate reveals potent FDA approved drug choice for treating COVID-19.
Velu P, Rathinavel T, Kumarasamy S, ..., Rajamanickam K, Shanmugam G
J Biomol Struct Dyn - (-) 1-17 [2022-02-09; online 2022-02-09]
Category: Genomics & transcriptomics Category: Health Category: Public Health Type: Journal article
PubMed DOI Crossref
Co-circulation of SARS-CoV-2 Alpha and Gamma variants in Italy, February and March 2021.
Stefanelli P, Trentini F, Guzzetta G, ..., Merler S, COVID-19 National Microbiology Surveillance Study Group
Euro Surveill 27 (5) - [2022-02-00; online 2022-02-05]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
SARS-CoV-2 phase I transmission and mutability linked to the interplay of climatic variables: a global observation on the pandemic spread.
Sabarathinam C, Mohan Viswanathan P, Senapathi V, ..., Alagappan R, Bhattacharya P
Environ Sci Pollut Res Int - (-) - [2022-01-14; online 2022-01-14]
Category: Genomics & transcriptomics Category: Other Type: Journal article
PubMed DOI Crossref
Multi-ancestry fine mapping implicates OAS1 splicing in risk of severe COVID-19.
Huffman JE, Butler-Laporte G, Khan A, ..., Richards JB, Zeberg H
Nat Genet - (-) - [2022-01-13; online 2022-01-13]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Common, low-frequency, rare, and ultra-rare coding variants contribute to COVID-19 severity.
Fallerini C, Picchiotti N, Baldassarri M, ..., Renieri A, Furini S
Hum Genet 141 (1) 147-173 [2022-01-00; online 2021-12-10]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Funder: KAW/SciLifeLab National COVID program Funder: VR Research Area: Biobanks for COVID-19 research Type: Journal article

Year 2021

PubMed DOI Crossref
The polymorphism L412F in TLR3 inhibits autophagy and is a marker of severe COVID-19 in males.
Croci S, Venneri MA, Mantovani S, ..., Renieri A, Meloni I
Autophagy - (-) 1-11 [2021-12-29; online 2021-12-29]
Category: Genomics & transcriptomics Category: Health Type: Journal article
DOI Crossref
Influenza A H1N1–mediated pre-existing immunity to SARS-CoV-2 predicts COVID-19 outbreak dynamics
Almazán NM, Rahbar A, Carlsson M, ..., Sörensen B, Söderberg-Nauclér C
medRxiv - (-) - [2021-12-25; online 2021-12-25]
Category: Genomics & transcriptomics Category: Health Category: Omicron VoC Funder: KAW/SciLifeLab National COVID program Research Area: Drug discovery and repurposing of drugs Research Area: High-throughput and high-content serology Type: Preprint
PubMed DOI Crossref
Age-dependent impact of the major common genetic risk factor for COVID-19 on severity and mortality
Nakanishi T, Pigazzini S, Degenhardt F, ..., Richards JB, Ganna A
J Clin Invest 131 (23) - [2021-12-01; online 2021-12-01]
Category: Genomics & transcriptomics Funder: KAW/SciLifeLab National COVID program Funder: VR Research Area: Biobanks for COVID-19 research Type: Journal article
PubMed DOI Crossref
Mapping the human genetic architecture of COVID-19.
COVID-19 Host Genetics Initiative
Nature 600 (7889) 472-477 [2021-12-00; online 2021-07-08]
Category: Genomics & transcriptomics Category: Health Funder: KAW/SciLifeLab National COVID program Funder: VR Research Area: Biobanks for COVID-19 research Research Area: Vaccine Type: Journal article
PubMed DOI Crossref
Epidemiological characterisation of the first 785 SARS-CoV-2 Omicron variant cases in Denmark, December 2021.
Espenhain L, Funk T, Overvad M, ..., Krause TG, Müller L
Euro Surveill 26 (50) - [2021-12-00; online 2021-12-18]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Angiotensin-Converting Enzyme 2 (SARS-CoV-2 receptor) expression in human skeletal muscle.
Perez-Valera M, Martinez-Canton M, Gallego-Selles A, ..., Martin-Rincon M, Calbet JAL
Scand J Med Sci Sports 31 (12) 2249-2258 [2021-12-00; online 2021-10-04]
Category: Biochemistry Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Beta RBD boost broadens antibody-mediated protection against SARS-CoV-2 variants in animal models.
Sheward DJ, Mandolesi M, Urgard E, ..., Karlsson Hedestam GB, Murrell B
Cell Rep Med 2 (11) 100450 [2021-11-16; online 2021-10-23]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Funder: H2020 Funder: VR Type: Journal article
PubMed DOI Crossref
Evolutionary analysis of the Delta and Delta Plus variants of the SARS-CoV-2 viruses.
Kannan SR, Spratt AN, Cohen AR, ..., Byrareddy SN, Singh K
J Autoimmun 124 (-) 102715 [2021-11-00; online 2021-08-11]
Category: Genomics & transcriptomics Category: Health Type: Journal article
DOI Crossref
Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure
Rando HM, MacLean AL, Lee AJ, ..., Greene CS, None
mSystems 6 (5) - [2021-10-26; online 2021-10-26]
Category: Genomics & transcriptomics Category: Health Type: Review
PubMed DOI Crossref
Identification of driver genes for critical forms of COVID-19 in a deeply phenotyped young patient cohort
Carapito R, Li R, Helms J, ..., Chittenden TW, Bahram S
Sci. Transl. Med. - (-) eabj7521 [2021-10-26; online 2021-10-26]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
X-Linked TLR7 Deficiency Underlies Critical COVID-19 Pneumonia in a Male Patient with Ataxia-Telangiectasia.
Abolhassani H, Vosughimotlagh A, Asano T, ..., Hammarström L, Pan-Hammarström Q
J Clin Immunol - (-) - [2021-10-23; online 2021-10-23]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Low sensitivity of rapid antigen tests to detect SARS-CoV-2 infections prior to and on the day of symptom onset in staff and residents of a nursing home, Germany, January-March 2021.
Bender JK, Meyer ED, Sandfort M, ..., Bojara G, Hellenbrand W
The Journal of Infectious Diseases - (-) - [2021-10-14; online 2021-10-14]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Increased risk of hospitalisation and intensive care admission associated with reported cases of SARS-CoV-2 variants B.1.1.7 and B.1.351 in Norway, December 2020 -May 2021.
Veneti L, Seppälä E, Larsdatter Storm M, ..., Nygård K, Whittaker R
PLoS One 16 (10) e0258513 [2021-10-11; online 2021-10-11]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Vaccine effectiveness against infection with the Delta (B.1.617.2) variant, Norway, April to August 2021.
Seppälä E, Veneti L, Starrfelt J, ..., Watle SV, Meijerink H
Euro Surveill 26 (35) - [2021-09-00; online 2021-09-04]
Category: Drug Discovery Category: Genomics & transcriptomics Category: Vaccines Type: Journal article
PubMed DOI Crossref
The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages
Martin DP, Weaver S, Tegally H, ..., de Oliveira T, Kosakovsky Pond SL
Cell - (-) - [2021-09-00; online 2021-09-00]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Unexpected details regarding nosocomial transmission revealed by whole-genome sequencing of severe acute respiratory coronavirus virus 2 (SARS-CoV-2).
Myhrman S, Olausson J, Ringlander J, ..., Sansone M, Westin J
Infect Control Hosp Epidemiol - (-) 1-5 [2021-08-20; online 2021-08-20]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Plasma ACE2 species are differentially altered in COVID-19 patients.
García-Ayllón MS, Moreno-Pérez O, García-Arriaza J, ..., Merino E, Sáez-Valero J
FASEB J 35 (8) e21745 [2021-08-00; online 2021-07-01]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Impact of the Alpha VOC on disease severity in SARS-CoV-2-positive adults in Sweden
Strålin K, Bruce D, Wahlström E, ..., Bark AMB, Hanberger H
J Infect - (-) - [2021-08-00; online 2021-08-00]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Emergence of an early SARS-CoV-2 epidemic in the United States.
Zeller M, Gangavarapu K, Anderson C, ..., Suchard MA, Andersen KG
Cell - (-) - [2021-07-27; online 2021-07-27]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Variant Analysis of SARS-CoV-2 Genomes from Belgian Military Personnel Engaged in Overseas Missions and Operations.
Pirnay JP, Selhorst P, Hong SL, ..., Soentjens P, Baele G
Viruses 13 (7) - [2021-07-13; online 2021-07-13]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Up State of the SARS-COV-2 Spike Homotrimer Favors an Increased Virulence for New Variants.
Giron CC, Laaksonen A, Barroso da Silva FL
Front Med Technol 3 (-) 694347 [2021-06-30; online 2021-06-30]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Evolution, Correlation, Structural Impact and Dynamics of Emerging SARS-CoV-2 Variants.
Spratt AN, Kannan SR, Woods LT, ..., Byrareddy SN, Singh K
Comput Struct Biotechnol J - (-) - [2021-06-24; online 2021-06-24]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance.
Simonetti M, Zhang N, Harbers L, ..., Ghisetti V, Crosetto N
Nat Commun 12 (1) 3903 [2021-06-23; online 2021-06-23]
Category: Biochemistry Category: Genomics & transcriptomics Category: Other Funder: KAW/SciLifeLab National COVID program Research Area: Viral sequence evolution Type: Journal article
PubMed DOI Crossref
Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2
O'Toole A, Hill V
Wellcome Open Res 6 (-) 121 [2021-06-07; online 2021-05-19]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Multiplexed detection of SARS-CoV-2 and other respiratory infections in high throughput by SARSeq.
Yelagandula R, Bykov A, Vogt A, ..., Cochella L, Elling U
Nat Commun 12 (1) 3132 [2021-05-25; online 2021-05-25]
Category: Genomics & transcriptomics Category: Other Type: Journal article
PubMed DOI Crossref
Colorimetric isothermal nucleic acid detection of SARS-CoV-2 with dye combination.
Wu S, Liu X, Ye S, ..., Dong X, Yin X
Heliyon - (-) e06886 [2021-04-21; online 2021-04-21]
Category: Genomics & transcriptomics Category: Other Type: Journal article
DOI Crossref
Mendelian randomisation identifies alternative splicing of the FAS death receptor as a mediator of severe COVID-19
Klaric L, Gisby JS, Papadaki A, ..., Wilson JF, Peters JE
medRxiv - (-) - [2021-04-07; online 2021-04-07]
Category: Biochemistry Category: Genomics & transcriptomics Type: Preprint
PubMed DOI Crossref
Evaluation of 11 SARS-CoV-2 antibody tests by using samples from patients with defined IgG antibody titers.
Lagerqvist N, Maleki KT, Verner-Carlsson J, ..., Nilsson C, Klingström J
Sci Rep 11 (1) 7614 [2021-04-07; online 2021-04-07]
Category: Genomics & transcriptomics Category: Other Funder: VR Type: Journal article
DOI Crossref
Uneven growth of SARS-CoV-2 clones evidenced by more than 500,000 whole-genome sequences
Zeng HL, Liu Y, Thorell K, Norden R, Aurell E
bioRxiv - (-) - [2021-04-06; online 2021-04-06]
Category: Genomics & transcriptomics Funder: VR Type: Preprint
DOI Crossref
Driving potent neutralization of a SARS-CoV-2 Variant of Concern with a heterotypic boost
Sheward DJ, Mandolesi M, Kim C, ..., Hedestam GBK, Murrell B
bioRxiv - (-) - [2021-04-05; online 2021-04-05]
Category: Biochemistry Category: Genomics & transcriptomics Funder: H2020 Funder: VR Type: Preprint
PubMed DOI Crossref
Recommendations for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples.
Kubik S, Marques AC, Xing X, ..., Willig A, Xu Z
Clin Microbiol Infect - (-) - [2021-04-01; online 2021-04-01]
Category: Biochemistry Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Characteristics of SARS-CoV-2 variants of concern B.1.1.7, B.1.351 or P.1: data from seven EU/EEA countries, weeks 38/2020 to 10/2021.
Funk T, Pharris A, Spiteri G, ..., Adlhoch C, COVID study groups
Euro Surveill 26 (16) - [2021-04-00; online 2021-04-24]
Category: Genomics & transcriptomics Type: Journal article
DOI Crossref
Factors Associated with Emerging and Re-emerging of SARS-CoV-2 Variants
Spratt AN, Kannan SR, Woods LT, ..., Byrareddy SN, Singh K
bioRxiv - (-) - [2021-03-24; online 2021-03-24]
Category: Biochemistry Category: Genomics & transcriptomics Type: Preprint
PubMed DOI Crossref
Diverse SARS-CoV-2 variants preceded the initial COVID-19 outbreak in Croatia.
Rokić F, Trgovec-Greif L, Sučić N, ..., Vugrek O, Jurak I
Arch Virol - (-) - [2021-03-24; online 2021-03-24]
Category: Genomics & transcriptomics Type: Journal article
DOI Crossref
Alternative splicing of OAS1 alters the risk for severe COVID-19
Huffman J, Butler-Laporte G, Khan A, ..., Richards JB, Zeberg H
medRxiv - (-) - [2021-03-20; online 2021-03-20]
Category: Genomics & transcriptomics Type: Preprint
DOI Crossref
Mapping the human genetic architecture of COVID-19 by worldwide meta-analysis
None , Ganna A
medRxiv - (-) - [2021-03-12; online 2021-03-12]
Category: Genomics & transcriptomics Funder: KAW/SciLifeLab National COVID program Research Area: Biobanks for COVID-19 research Type: Preprint
DOI Crossref
The emergence and ongoing convergent evolution of the N501Y lineages coincides with a major global shift in the SARS-CoV-2 selective landscape
Martin DP, Weaver S, Tegally H, ..., None , None
medRxiv - (-) - [2021-03-05; online 2021-03-05]
Category: Genomics & transcriptomics Funder: H2020 Type: Preprint
DOI Crossref
A genomic region associated with protection against severe COVID-19 is inherited from Neandertals
Zeberg H, Pääbo S
Proc Natl Acad Sci USA 118 (9) e2026309118 [2021-03-02; online 2021-02-16]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Time series analysis and mechanistic modelling of heterogeneity and sero-reversion in antibody responses to mild SARS‑CoV-2 infection.
Manisty C, Treibel TA, Jensen M, ..., Noursadeghi M, Moon JC
EBioMedicine 65 (-) 103259 [2021-03-01; online 2021-03-01]
Category: Genomics & transcriptomics Category: Proteins Funder: H2020 Type: Journal article
PubMed DOI Crossref
Shared genetic etiology between idiopathic pulmonary fibrosis and COVID-19 severity
Fadista J, Kraven LM, Karjalainen J, ..., Jenkins RG, Feenstra B
EBioMedicine 65 (-) 103277 [2021-03-00; online 2021-03-00]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Interactions between seasonal human coronaviruses and implications for the SARS-CoV-2 pandemic: A retrospective study in Stockholm, Sweden, 2009-2020.
Dyrdak R, Hodcroft EB, Wahlund M, Neher RA, Albert J
J Clin Virol 136 (-) 104754 [2021-03-00; online 2021-02-08]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Long-term outcome after intensive care for COVID-19: differences between men and women-a nationwide cohort study.
Zettersten E, Engerström L, Bell M, ..., Block L, Larsson E
Crit Care 25 (1) 86 [2021-02-25; online 2021-02-25]
Category: Biochemistry Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
A Neanderthal OAS1 isoform protects individuals of European ancestry against COVID-19 susceptibility and severity.
Zhou S, Butler-Laporte G, Nakanishi T, ..., Kaufmann DE, Richards JB
Nat Med 27 (4) 659-667 [2021-02-25; online 2020-10-14]
Category: Genomics & transcriptomics Funder: VR Research Area: Biobanks for COVID-19 research Type: Journal article
PubMed DOI Crossref
CSF Biomarkers in Patients With COVID-19 and Neurologic Symptoms: A Case Series.
Edén A, Kanberg N, Gostner J, ..., Zetterberg H, Gisslén M
Neurology 96 (2) e294-e300 [2021-01-12; online 2020-10-01]
Category: Genomics & transcriptomics Type: Journal article
DOI Crossref
Inherent random fluctuations in COVID-19 outbreaks may explain rapid growth of new mutated virus variants
Bodin K, Rocklov J
medRxiv - (-) - [2021-01-08; online 2021-01-08]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Temporal increase in D614G mutation of SARS-CoV-2 in the Middle East and North Africa.
Sallam M, Ababneh NA, Dababseh D, Bakri FG, Mahafzah A
Heliyon 7 (1) e06035 [2021-01-00; online 2021-01-20]
Category: Genomics & transcriptomics Type: Journal article

Year 2020

PubMed DOI Crossref
A direct RT-qPCR approach to test large numbers of individuals for SARS-CoV-2.
Maricic T, Nickel O, Aximu-Petri A, ..., Borte S, Pääbo S
PLoS One 15 (12) e0244824 [2020-12-31; online 2020-12-31]
Category: Genomics & transcriptomics Category: Health Type: Journal article
DOI Crossref
The MERS-CoV receptor gene is among COVID-19 risk factors inherited from Neandertals
Zeberg H, Paabo S
bioRxiv - (-) - [2020-12-12; online 2020-12-12]
Category: Genomics & transcriptomics Category: Other Type: Preprint
PubMed DOI Crossref
Thermal inactivation of COVID-19 specimens improves RNA quality and quantity.
Hemati M, Soosanabadi M, Ghorashi T, ..., Danaei N, Kokhaei P
J Cell Physiol - (-) - [2020-12-11; online 2020-12-11]
Category: Genomics & transcriptomics Type: Journal article
DOI Crossref
SARS-CoV-2 genome diversity at the binding sites of oligonucleotides used for COVID-19 diagnosis
Valieris R, Kowaslki M, Frolova A, ..., Silva I, Dias-Neto E
medRxiv - (-) - [2020-12-11; online 2020-12-11]
Category: Genomics & transcriptomics Type: Preprint
PubMed DOI Crossref
Genetic mechanisms of critical illness in Covid-19.
Pairo-Castineira E, Clohisey S, Klaric L, ..., Wilson JF, Baillie JK
Nature - (-) - [2020-12-11; online 2020-12-11]
Category: Biochemistry Category: Genomics & transcriptomics Type: Journal article
DOI Crossref
Novel Broad-Spectrum Antiviral Inhibitors Targeting Host Factors Essential for Replication of Pathogenic RNA Viruses
Tampere M, Pettke A, Salata C, ..., Jafari R, Puumalainen MR
Viruses 12 (12) 1423 [2020-12-10; online 2020-12-10]
Category: Biochemistry Category: Drug Discovery Category: Genomics & transcriptomics Category: Proteins Funder: VR Type: Journal article
PubMed DOI Crossref
No impact of cancer and plague-relevant FPR1 polymorphisms on COVID-19.
Petrazzuolo A, Le Naour J, Vacchelli E, ..., Smadja DM, Kroemer G
Oncoimmunology 9 (1) 1857112 [2020-12-08; online 2020-12-08]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Genetically proxied interleukin-6 receptor inhibition: opposing associations with COVID-19 and pneumonia.
Larsson SC, Burgess S, Gill D
Eur Respir J 57 (1) - [2020-11-19; online 2020-11-19]
Category: Genomics & transcriptomics Funder: VR Type: Journal article
DOI Crossref
The impact of early public health interventions on SARS-CoV-2 transmission and evolution
Duchene S, Featherstone L, de Blasio BF, ..., Bohlin J, Pettersson JHO
medRxiv - (-) - [2020-11-18; online 2020-11-18]
Category: Genomics & transcriptomics Category: Health Type: Preprint
DOI Crossref
Modelling the dispersion of SARS-CoV-2 on a dynamic network graph
Elofsson A, Bryant P
medRxiv - (-) - [2020-11-17; online 2020-10-21]
Category: Genomics & transcriptomics Category: Social Science & Humanities Funder: VR Type: Preprint
DOI Crossref
Global analysis of more than 50,000 SARS-CoV-2 genomes reveals epistasis between eight viral genes
Zeng HL, Dichio V, Rodríguez Horta E, Thorell K, Aurell E
Proc Natl Acad Sci USA - (-) 202012331 [2020-11-17; online 2020-11-17]
Category: Genomics & transcriptomics Funder: H2020 Type: Journal article
PubMed DOI Crossref
The Immunology of Multisystem Inflammatory Syndrome in Children with COVID-19.
Consiglio CR, Cotugno N, Sardh F, ..., Palma P, Brodin P
Cell 183 (4) 968-981.e7 [2020-11-12; online 2020-09-06]
Category: Genomics & transcriptomics Funder: KAW/SciLifeLab National COVID program Research Area: Biomarkers and systems immunology Type: Journal article
PubMed DOI Crossref
Inborn errors of type I IFN immunity in patients with life-threatening COVID-19.
Zhang Q, Bastard P, Liu Z, ..., Su HC, Casanova JL
Science 370 (6515) eabd4570 [2020-10-23; online 2020-09-24]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Autoantibodies against type I IFNs in patients with life-threatening COVID-19.
Bastard P, Rosen LB, Zhang Q, ..., Su HC, Casanova JL
Science 370 (6515) - [2020-10-23; online 2020-09-24]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
Upper Respiratory Tract Levels of Severe Acute Respiratory Syndrome Coronavirus 2 RNA and Duration of Viral RNA Shedding Do Not Differ Between Patients With Mild and Severe/Critical Coronavirus Disease 2019
Yilmaz A, Marklund E, Andersson M, ..., Lindh M, Gisslén M
The Journal of Infectious Diseases 223 (1) 15-18 [2020-10-05; online 2020-10-05]
Category: Genomics & transcriptomics Category: Health Funder: KAW/SciLifeLab National COVID program Research Area: Biobanks for COVID-19 research Research Area: Biomarkers and systems immunology Type: Journal article
PubMed DOI Crossref
Robust T Cell Immunity in Convalescent Individuals with Asymptomatic or Mild COVID-19.
Sekine T, Perez-Potti A, Rivera-Ballesteros O, ..., Aleman S, Buggert M
Cell 183 (1) 158-168.e14 [2020-10-01; online 2020-08-14]
Category: Genomics & transcriptomics Category: Other Category: Proteins Funder: KAW/SciLifeLab National COVID program Funder: VR Research Area: Data-driven research – models and AI Research Area: Host cell systems biology and targets Type: Journal article
PubMed DOI Crossref
The major genetic risk factor for severe COVID-19 is inherited from Neanderthals.
Zeberg H, Pääbo S
Nature 587 (7835) 610-612 [2020-09-30; online 2020-09-30]
Category: Genomics & transcriptomics Type: Journal article
PubMed DOI Crossref
MAIT cell activation and dynamics associated with COVID-19 disease severity.
Parrot T, Gorin J, Ponzetta A, ..., Strålin K, Sandberg JK
Sci Immunol 5 (51) - [2020-09-28; online 2020-09-30]
Category: Genomics & transcriptomics Category: Health Category: Proteins Funder: KAW/SciLifeLab National COVID program Funder: VR Research Area: Data-driven research – models and AI Research Area: Host cell systems biology and targets Type: Journal article
PubMed DOI Crossref
Presence of hyaluronan in lung alveoli in severe Covid-19 - an opening for new treatment options?
Hellman U, Karlsson MG, Engström-Laurent A, ..., Laurent C, Blomberg A
J Biol Chem 295 (45) 15418-15422 [2020-09-25; online 2020-09-25]
Category: Genomics & transcriptomics Category: Imaging Type: Journal article
PubMed DOI Crossref
Shedding of infectious SARS-CoV-2 from airways in hospitalized COVID-19 patients in relation to serum antibody responses
Glans H, Gredmark-Russ S, Olausson M, ..., Klingstrom J, Brave A
Infect Dis . 2020 Dec 10;20(1):942. 21 (1) 494 [2020-09-13; online 2020-09-13]
Category: Genomics & transcriptomics Category: Health Funder: Hjärt-Lungfonden Funder: VR Type: Journal article
DOI Crossref
Four SARS-CoV-2 Genome Sequences from Late April in Stockholm, Sweden, Reveal a Rare Mutation in the Spike Protein
Soratto TAT, Darban H, Bjerkner A, ..., Allander T, Andersson B
Microbiol Resour Announc 9 (35) - [2020-08-27; online 2020-08-27]
Category: Genomics & transcriptomics Category: Health Type: Journal article
PubMed DOI Crossref
Natural killer cell immunotypes related to COVID-19 disease severity.
Maucourant C, Filipovic I, Ponzetta A, ..., Björkström NK, Karolinska COVID-19 Study Group
Sci Immunol 5 (50) - [2020-08-21; online 2020-08-23]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Category: Imaging Category: Other Category: Proteins Funder: KAW/SciLifeLab National COVID program Funder: VR Funder: VR: Special COVID-19 funding Research Area: Data-driven research – models and AI Research Area: Diagnostics for virus Research Area: Host cell systems biology and targets Type: Journal article
PubMed DOI Crossref
Pronounced difference in Covid-19 antibody prevalence indicates cluster transmission in Stockholm, Sweden.
Lundkvist Å, Hanson S, Olsen B
Infect Ecol Epidemiol 10 (1) 1806505 [2020-08-11; online 2020-08-11]
Category: Genomics & transcriptomics Funder: VR Type: Journal article
DOI Crossref
Genetic and Phenotypic Evidence for the Causal Relationship Between Aging and COVID-19
Ying K, Zhai R, Pyrkov TV, ..., Shen X, Gladyshev VN
- - (-) - [2020-08-07; online 2020-08-07]
Category: Genomics & transcriptomics Category: Health Type: Preprint
DOI Crossref
Multiomic Immunophenotyping of COVID-19 Patients Reveals Early Infection Trajectories
Su Y, Chen D, Lausted C, ..., Heath JR, None
bioRxiv - (-) - [2020-07-28; online 2020-07-28]
Category: Genomics & transcriptomics Type: Preprint
DOI Crossref
Proteomic Profiling in Biracial Cohorts Implicates DC-SIGN as a Mediator of Genetic Risk in COVID-19
Katz DH, Tahir UA, Ngo D, ..., Wilson JG, Gerszten RE
- - (-) - [2020-06-11; online 2020-06-11]
Category: Biochemistry Category: Genomics & transcriptomics Category: Health Type: Preprint
DOI Crossref
A Global Effort to Define the Human Genetics of Protective Immunity to SARS-CoV-2 Infection
Casanova JL, Su HC, Abel L, ..., Zhang Q, Zhang S
Cell 181 (6) 1194-1199 [2020-06-00; online 2020-06-00]
Category: Genomics & transcriptomics Type: Journal article
SciLifeLab Data Centre
Publications 9.5.1